Bioconductor Missing Data

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Missing Data TCGAbiolinks Kaplan-Meier LIHC Xenabrowser

5.4 years ago jam526 • 0

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3.3k

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deseq2 sample_table missing data

updated 6.2 years ago by g.wang2 • 0 • written 10.0 years ago by anpham ▴ 60

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deseq2 paired samples missing data multiple treatments

updated 6.4 years ago by Michael Love 43k • written 6.4 years ago by greg.deakin • 0

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3.0k

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limma missing data methylation normalization

updated 7.5 years ago by Aaron Lun ★ 28k • written 7.5 years ago by mheydarpour ▴ 10

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2.8k

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limma contrast missing data lmfit makecontrasts

updated 7.6 years ago by Gordon Smyth 52k • written 7.6 years ago by wewolski ▴ 10

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pcamethods missing data

8.0 years ago eli-sava • 0

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software error rnaseq wgcna missing data

9.3 years ago • updated 8.9 years ago dvillarlozano ▴ 10

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1.2k

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cellhts2 upload missing data

updated 9.2 years ago by Joseph Barry ▴ 160 • written 9.2 years ago by zmorehouse • 0

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1.2k

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missing data filter

updated 9.3 years ago by James W. MacDonald 68k • written 9.3 years ago by rgescudero • 0

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1.7k

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missing data missing value imputation impute MICE bioconductor

9.5 years ago svlachavas ▴ 840

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1.6k

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software error missing data workflowinstall

9.9 years ago anoll2 • 0

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bayseq missing data

10.0 years ago k.w.lau • 0

12 results • Page 1 of 1

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Answer: fast apply on RleList by story.benjamin ▴ 20

solved with viewApply (code is simplified below) test.split <- split(test.gr,seqnames(test.gr)) final.stats <- mclapply(uniqu…

Comment: fast apply on RleList by story.benjamin ▴ 20

Hi James, thanks for the reply. I ultimately figured it out ... viewApply showed a massive speed increase for me (see other answer) - I was…

Answer: fast apply on RleList by James W. MacDonald 68k

There is already a 'mean' function that will dispatch on an `RleList` that you can use. I don't have a long `RleList` in hand to test it on…

Answer: Custom CDF creation for HTA 2.0 array using GTF annotation by James W. MacDonald 68k

It doesn't appear that Manhong Dai is working at UM any longer, and the webpage appears to have fallen into disrepair (for example, the lin…

Comment: how to use `arrayWeightsQuick()`? by matthew • 0

In the specific use-case I have in mind, `expression` is a simple `matrix` of log2 gene expression per sample, no missing values.

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Answer: BiocParallel_1.40.1.tar.gz not available

Modelling gene program dynamics across time with {lemur}

A: DESeq2 one group vs multiple groups comparison in presence of batch effect

Comment: BiocParallel_1.40.1.tar.gz not available

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