Bioconductor Missing Data

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Missing Data TCGAbiolinks Kaplan-Meier LIHC Xenabrowser

5.3 years ago jam526 • 0

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3.2k

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deseq2 sample_table missing data

updated 6.1 years ago by g.wang2 • 0 • written 9.9 years ago by anpham ▴ 60

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deseq2 paired samples missing data multiple treatments

updated 6.2 years ago by Michael Love 43k • written 6.2 years ago by greg.deakin • 0

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2.9k

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limma missing data methylation normalization

updated 7.3 years ago by Aaron Lun ★ 28k • written 7.3 years ago by mheydarpour ▴ 10

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2.7k

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limma contrast missing data lmfit makecontrasts

updated 7.5 years ago by Gordon Smyth 52k • written 7.5 years ago by wewolski ▴ 10

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990

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pcamethods missing data

7.9 years ago eli-sava • 0

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software error rnaseq wgcna missing data

9.2 years ago • updated 8.8 years ago dvillarlozano ▴ 10

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1.2k

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cellhts2 upload missing data

updated 9.1 years ago by Joseph Barry ▴ 160 • written 9.1 years ago by zmorehouse • 0

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1.1k

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missing data filter

updated 9.2 years ago by James W. MacDonald 68k • written 9.2 years ago by rgescudero • 0

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1.7k

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missing data missing value imputation impute MICE bioconductor

9.4 years ago svlachavas ▴ 840

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1.6k

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software error missing data workflowinstall

9.8 years ago anoll2 • 0

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bayseq missing data

9.8 years ago k.w.lau • 0

12 results • Page 1 of 1

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Answer: SingleR with multiple single cell references by Aaron Lun ★ 28k

> Is it necessary to piece together the individual steps manually (e.g. aggregateReference, trainSingleR, classifySingleR, combineRecompute…

Answer: Automatically install dependencies by ATpoint ★ 4.7k

The BiocManager, which is sort of an extended wrapper around `install.packages`, installs all R dependencies. If you see errors then this i…

Answer: To count or not to count multi-overlapping reads? by Gordon Smyth 52k

> How does it handle reads that map to a gene that is located in a region that also has another gene but on the alternate strand? Overlapp…

Comment: Weird p-values using DESeq2? by ATpoint ★ 4.7k

This does not look like normalized counts but raw counts. Consider using `counts(dds, normalized = TRUE)` or the output of `normTransform()…

Answer: Weird p-values using DESeq2? by Wolfgang Huber ★ 13k

Dear Ingrid, thank you for asking. Can you provide the input count matrix (you can "pseudonymize" the biological conditions and the gene n…

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A: Fraction count for multi mapping reads; how to generate input file for Deseq2 fo

Comment: Weird p-values using DESeq2?

Comment: Overcoming confounding in batch effect correction

Answer: Store Matrix in DataFrame Cell

Answer: enrichGOgradient color change

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